Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
4NAH Chain:D ((2-160))
-EHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
General information:
TITO was launched using:
RESULT:
Template:
4NAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99985 for 1204 contacts (-83.0/contact) +
2D Compatibility (PS) -17229 + (NN) -6665 + (LL) 208
1D Compatibility (HY) -24000 + (ID) 7950
Total energy: -155621.0 ( -129.25 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_4NAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAH-query.scw
PDB file :
Tito_Scwrl_4NAH.pdb
: