Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQQKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
2LMF Chain:A ((1-23))
---------------------------------------------------------------LLGDFFRKSKEKIGKEFKRIVQR--------
General information:
TITO was launched using:
RESULT:
Template:
2LMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1103 for 92 contacts (-12.0/contact) +
2D Compatibility (PS) -2320 + (NN) 658 + (LL) 5660
1D Compatibility (HY) -2400 + (ID) 350
Total energy: 145.0 ( 1.58 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_2LMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LMF-query.scw
PDB file :
Tito_Scwrl_2LMF.pdb
: