Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
2RKS Chain:A ((9-141))
---------------------------------------------KEPATLIKAIDGDTVKLMYKGQPMTFRLLKVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIY-ADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
2RKS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10124 for 1014 contacts (10.0/contact) +
2D Compatibility (PS) -14006 + (NN) -4247 + (LL) 3588
1D Compatibility (HY) -10000 + (ID) 2550
Total energy: -17091.0 ( -16.86 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2RKS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKS-query.scw
PDB file :
Tito_Scwrl_2RKS.pdb
: