Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILAEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPTVNDLPERDLSQQISDYEKYGANAVSILTDEKYFGGSFERLQALTTKTTLPVLCKDFIIDPLQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLIEVHDRHELERAYKVNAKLIGVNNRDLKRFVTNVEHTNTILENKKPNHHYISESGIHDASDVRKILHSGIDGLLIGEALMRCDNLSEFLPQLKMQKVKS
3UXD Chain:B ((47-238))
------------------------------------------------AIIAVYKRKSPSGLDV-ERDPIEYAKFMERYAVGLV-ILTEEKYFNGSYEDLRKIASSVSIPILMWDFIVKESQIDDAYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDEEDLDIALRIGARIIIISSRDLETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLGVNAFEIGSSLMR------------------
General information:
TITO was launched using:
RESULT:
Template:
3UXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102548 for 1558 contacts (-65.8/contact) +
2D Compatibility (PS) -20606 + (NN) -6259 + (LL) 5176
1D Compatibility (HY) -15600 + (ID) 3450
Total energy: -143287.0 ( -91.97 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_3UXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UXD-query.scw
PDB file :
Tito_Scwrl_3UXD.pdb
: