Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSETIFGKILTGEIPSFKVYEDDYVYAFLDISQVTKGHTLLIPKKASANIFETDEETMKHIGAALPKVANAIKRAFNPDGLNIIQNNGEFADQSVFHIHFHLIPRYENDIDGFGYKWETHEDILDNDAKQQIAEQIQAQF
3IMI Chain:B ((11-128))
---CIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGEN-DGFGAVWKSHQN------------------
General information:
TITO was launched using:
RESULT:
Template:
3IMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57843 for 783 contacts (-73.9/contact) +
2D Compatibility (PS) -12608 + (NN) -5914 + (LL) 2376
1D Compatibility (HY) -12000 + (ID) 3400
Total energy: -89389.0 ( -114.16 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_3IMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IMI-query.scw
PDB file :
Tito_Scwrl_3IMI.pdb
: