Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MSNANNADNKQFFSKILNSIGAGVVIALVPNALL-GEVLKIFKSGNEILELTYQLVILIQLFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQ-NKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLV------AIATAISL-NGLGSGAANLGIVAACVTFLFGSL---------------RVNSIGVNAVLLIGAAKMMIP------VYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYT--GLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ |
| 4BWZ Chain:A ((3-386)) | GAEHLLEIFYLLLAAQVCAFIFKRLNQPVVIGEVLAGVLVGPALLGLVHEGEILEFLAELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFETLPALFLGTALVATSVGITARVLQELGVLSRPYSRIILGAAVIDDVLGLIVLACVNGVAETGQVEVGAITRLIVLSVVFVGLAVFLSTLIARLPLERLPVGSPLGFALALGVGMAALAASIGLAPIVGAFLGGMLLSEVREKYRLEEPIFAIESFLAPIFFAMVGVRLELSALASPVVLVAGTVVTVIAILGKVLGGFLGALTQGVRSALTVGCGMAPRGEVGLIVAALGLKAGAV-NEEEYAIVLFMVVFTTLFAPFAL-KPLIAWTERERAAKE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BWZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -358683 for 3127 contacts (-114.7/contact) +
2D Compatibility (PS) -34518 + (NN) 7048 + (LL) 500
1D Compatibility (HY) -20400 + (ID) 3500
Total energy: -409553.0 ( -130.97 by residue)
QMean score : 0.228
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