Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETNE
1GDT Chain:A ((150-182))
-----------------------------------------------AVLNMWQQGLGASHISKTMNIARSTVYKVINES--------------------
General information:
TITO was launched using:
RESULT:
Template:
1GDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2393 for 197 contacts (-12.1/contact) +
2D Compatibility (PS) -3615 + (NN) -386 + (LL) 5692
1D Compatibility (HY) -2000 + (ID) 350
Total energy: -3052.0 ( -15.49 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_1GDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GDT-query.scw
PDB file :
Tito_Scwrl_1GDT.pdb
: