Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MAVKHASAPKAYINITGLGF--AKLTKEGAELKYSDITKTRGLQKIGVETGGELKTAYADGGPIESGNTD-GEGKISLQMHAFPKEIRKIVFNED-YDEDGVYEEKQGKQNNYVAVWF-RQERRDGTFRTVLLPKVMFTNPKIDGETAEKDWDFSSEEVEGEALFPLVDNKKS--VRKYIFDSANMTNHDGDGEKGE-EAFLKKIL------GEEYTGNVTEGNEETL---------------------------------- |
| 3U4T Chain:A ((230-487)) | VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG--NFPLAIQYMEKQIRPTT-----------TDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 100740 for 1432 contacts (70.3/contact) +
2D Compatibility (PS) -20224 + (NN) 3342 + (LL) 1600
1D Compatibility (HY) 6400 + (ID) 700
Total energy: 91158.0 ( 63.66 by residue)
QMean score : -0.071
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