Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQLL------KGILVIVIG------QQISMILNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGSFLKRYTSNTYS--KDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETG--IAMDSNISQELLINVFIPNTPLHDGAMIIQGTKIAAAASYLPLSDSPKISKSLGTRHRAAVGISEVSDAFTVIVSEETGDISVTFDGKLRRDISNEIFEELLAEHWFGTRFQKKGVK--- |
| 2CVH Chain:A ((1-220)) | --------MLST-------------------------GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRG----LNPEEALSRFILFTPSDFKEQRRVIGSLKKTVD----SNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIP----VIVINQVHFDSRTEM----TKPVAEQTLGYRCK---------DILRLDKLPKPGLRVAVLERHRFRP----------EGLMAYFRITERGIEDVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91039 for 1555 contacts (-58.5/contact) +
2D Compatibility (PS) -21859 + (NN) -4918 + (LL) 7012
1D Compatibility (HY) -4800 + (ID) 2250
Total energy: -117854.0 ( -75.79 by residue)
QMean score : 0.313
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