Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLLFVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVID----RTLKHCDNCGG-AIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAAGL--ISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
1YC2 Chain:B ((1-224))
MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRK-----YDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMAD---------------------
General information:
TITO was launched using:
RESULT:
Template:
1YC2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69246 for 1680 contacts (-41.2/contact) +
2D Compatibility (PS) -23279 + (NN) -9575 + (LL) 1880
1D Compatibility (HY) -15200 + (ID) 4200
Total energy: -119620.0 ( -71.20 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1YC2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YC2-query.scw
PDB file :
Tito_Scwrl_1YC2.pdb
: