Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRYFLVVFLFLFVGCMKKDFTLKDLSLPQEASSYLASSQNSSHNNQSIDPQALRENLKESYLKAWYSPWLDAKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDELIKNMDIERYPSTKIKAVVVRNNDVRAVPTNKPYYLSPKGYPFDRFQNSLVFPGTPVLITPFNPDKTYPPLQSSFVYGWIKVSELAYMRDKEIELLTKLKNYDMPIKEKNPLYTDY--GEFYPHAKIGELFPLIPQIQNASQIPPKKELKAYGFLKDAKGYAALQSVFLDEKDFFVFPKAFTSEIMAYFINTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIIKNATPFGTLIYLKGHIMLYLGERNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKDFVHKTSSPLNAN |
1NG2 Chain:A ((174-282)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------EMALSTGDVVEVVEKS-ESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPE--P-NYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHK--LL-----DGWWVIR--KDDVTGYFPSMYLQK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6145 for 563 contacts (10.9/contact) +
2D Compatibility (PS) -11113 + (NN) 1239 + (LL) 22048
1D Compatibility (HY) 2800 + (ID) 700
Total energy: 20419.0 ( 36.27 by residue)
QMean score : 0.088
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