Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------MEFYQVYDPLGHI---W--------LSALVALSPIALFFISLIVFKLKG-------YSAGFLSLALSILIALFVYKMPVQMVSASFFYGFLYG------LWPIAWIVIAAIFL----YNLSVKSGYFEILK------ESILSLTPDHRILVILIGFCFGSFLEG-----AIGFGGPVAITAAILV-------GLGLNPLYA-----AGLCLIANTAPVA------FGAVGIPITAMASVV---GIPE-LEISQMVGRVLPIFSIGIPFFIVFLMDGFRGI--RETFPAVAVTGFSFAIAQFLSSNYLGPQLPDIISALVSLVATTLFLKFWQPKH-------------IFTSNGKE----PTISTEKHH--ICKVVVAWMP---FVLLTITIIIWTQPWFKAL---FKEGGALAFSNFAFEFNSISQK------IFKTVPIVTEATNFPVVFKLPLILTTGTSIFLAALLSVFLLRVKISDAIGVFGATLKEMRLPILTIGVVLAFAYVANYSGMSATLALALA---DTGHVFTFLSPMVGWLGVFLTGSDTSSNLLFGSLQMLIATQLGLPEVLFLAANTSGGVVGKMISPQSIAIACAAVGLVGKESELFRFTVKYSIALAIIMGIVFTLIAYVFP--FIIPVTPT |
| 3VSM Chain:A ((27-659)) | NIQELQNFERWFKNNLSYSFSQKAEKVVNPNRNWNDNTVFDNLSPWTSVPDFGTVCHTLIGYCVRYNNTSDTLYQNPELAYNLINGLRIICSKLPDPPPHQQAPWGPVADWYHFTITMPEVFMNITIVLNETQHYDEAASLTRYWLGLYLPTAVNSMGWHRTAGNSMRMGVPYTYSQMLRGYSLAQIRQEQGIQEILNTIAFPYVTQGNGLHVDSIYIDHIDVRAYGYLINSYFTFAYYTYYFGDEVINTVGLTRAIENVGSPEGVVVPGVMSRNGTLYSNVIGNFITYPL-AVHSADYSKVLTKLSKTYYGSVVGVTNRLAYYESDPTNNIQAPLWTMARRIWNRRGRIINYNANTVSFESGIILQSLNGIMRIPSGTTSTQSFRPTIGQTAIAKTDTAGAILVYAKFAEMNNLQFKSCTLFYDHGMFQLYYNIGVEPNSLNNTNGRVIVLSRDTSVNTNDLSFEAQRINNNNSSEGTTF-----NGVVCHRVPITN-INVPSLTVRSPNSSVELVEQIISFQTMYTAT-ASACYKLNVEGHSDSLRAFRVNSDENIYVNV-----GNGVKALFNYPWVMVKEN---NKVSFMSANED-----TTIPFSVIMNSFTSIG---------EPALQYSPSNCFVYGNGFKLNNSTFDLQFIFEIV-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -559484 for 4034 contacts (-138.7/contact) +
2D Compatibility (PS) -52552 + (NN) 13456 + (LL) 1536
1D Compatibility (HY) -12800 + (ID) 4650
Total energy: -614494.0 ( -152.33 by residue)
QMean score : 0.178
|
|
|