Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEKNFWPLGIMSVLIFGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYENFKSNYRFSVGLKPLTESPKTPILPYFSKGTHGDKKIQENLLN-----NALILEKSNT--LYAQLQPLKPALDSPNIQVYLAFYPSQSQPRLLGTLDCKNACEPLKFDLLEGDKVGRYKILFKFVFKNKEELILEQLAFFK |
| 1YCS Chain:A ((4-194)) | VPSQKTYQGSYGFRLGFLHSGTAKSVTCTY--SPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNY---MCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YCS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27205 for 1399 contacts (-19.4/contact) +
2D Compatibility (PS) -19384 + (NN) 1121 + (LL) 380
1D Compatibility (HY) 2000 + (ID) 800
Total energy: -43888.0 ( -31.37 by residue)
QMean score : 0.171
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