Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRELMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENAHNEIAFFFAAREF
3VGV Chain:A ((4-137))
--ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEH----FFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPESAAREIAYFFAESEI
General information:
TITO was launched using:
RESULT:
Template:
3VGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54251 for 1005 contacts (-54.0/contact) +
2D Compatibility (PS) -13617 + (NN) 174 + (LL) 436
1D Compatibility (HY) -11600 + (ID) 4350
Total energy: -83208.0 ( -82.79 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3VGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGV-query.scw
PDB file :
Tito_Scwrl_3VGV.pdb
: