Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALY-KNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKINHL---------DFKTFKDALSL------GKGMMPKYNLNLEEIQAIYLYITSLGHKDERKDPSKP
3WFD Chain:C ((46-140))
-----------------------SAAVVRGKLVWEQN----NCVGCHTLLGEGAYFA-------------PELGNVVGRRGGEEGFNTFLQAWMKIQPLNVPGRRAMPQFHLSEGQVDDLAEFLKWSSKIDTNQWPPNK
General information:
TITO was launched using:
RESULT:
Template:
3WFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34081 for 497 contacts (-68.6/contact) +
2D Compatibility (PS) -8284 + (NN) -3269 + (LL) 3924
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -46360.0 ( -93.28 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_3WFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WFD-query.scw
PDB file :
Tito_Scwrl_3WFD.pdb
: