Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALR--ADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKSGEEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTD-CESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGIFS
4V02 Chain:B ((2-244))
-AEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDAAIGLRNLDMILGLENRIVYDILDVLEGRVPYEKALVKDKRGLSLWLLPA-------VIDIEKWNKTVEEIKNSGNYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR-------NYKVIVNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARRLMGESIPLKRYG--------------
General information:
TITO was launched using:
RESULT:
Template:
4V02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166836 for 2007 contacts (-83.1/contact) +
2D Compatibility (PS) -25267 + (NN) -6864 + (LL) 1856
1D Compatibility (HY) -27600 + (ID) 5800
Total energy: -230511.0 ( -114.85 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_4V02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V02-query.scw
PDB file :
Tito_Scwrl_4V02.pdb
: