Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNAHKERLESNLLELLQ------EALASLNDSELNS---LSVTKVECS-------KGKHHALVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVLDDSL--------EKQLRLDAIFNEIAKGKDND
1TM9 Chain:A ((1-137))
MEQNNIKEQLISFFNQACSTHQERLDFICSTRESDTFSSVDVPLEPIKNIIEITKDENQQIEITKIAVNNIKTLSSVGATGQYMASFFSTNSEPAIIFCVIYFLYHFGFLKDNNKKQIIKKAYETIADNIADYLNEN
General information:
TITO was launched using:
RESULT:
Template:
1TM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7859 for 729 contacts (-10.8/contact) +
2D Compatibility (PS) -11363 + (NN) -3884 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -25806.0 ( -35.40 by residue)
QMean score : 0.226
(partial model without unconserved sides chains):
PDB file :
Tito_1TM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TM9-query.scw
PDB file :
Tito_Scwrl_1TM9.pdb
: