Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRKS
3BVL Chain:E ((15-180))
MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRK-
General information:
TITO was launched using:
RESULT:
Template:
3BVL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85294 for 1259 contacts (-67.7/contact) +
2D Compatibility (PS) -17822 + (NN) -9834 + (LL) -28
1D Compatibility (HY) -24000 + (ID) 8300
Total energy: -145278.0 ( -115.39 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_3BVL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BVL-query.scw
PDB file :
Tito_Scwrl_3BVL.pdb
: