Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKK--------LADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSAEINPVLKTL---KPHLSIEAAIKEALQQLRS
2ZTD Chain:B ((17-208))
MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV---------------VRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
2ZTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117276 for 1167 contacts (-100.5/contact) +
2D Compatibility (PS) -17907 + (NN) -2449 + (LL) 1028
1D Compatibility (HY) -8400 + (ID) 2900
Total energy: -147904.0 ( -126.74 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTD-query.scw
PDB file :
Tito_Scwrl_2ZTD.pdb
: