Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVIKDHAIGLLMIRENLTKMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMREIGNLSILAPLHNPANLAGIEFVQKAHPHIP--QIAVFDTAFHASMPSYAYMYALPYELYEKYQIRRYGFHGTSHHYVAKEAAKFLNIPYEEFNAISLHLGNGSSAAAIQNGKSVDTSMGLTPLEGLIMGTRCGDIDPTVVEYIAQCANKSLEEVMKILNHESGLKGICG-DNDARNIEVRKEKGDKQAKLAFEMCVYRIKKYIGAYMVVLK-KVDAIIFTGGLGENYSALRESVCEGLENLGIALHKPTNDNP---GSALVNLSQPNTKIQILRIPTDEELEIALQAKEMVEKIKVV |
| 3SLC Chain:B ((21-414)) | --VLVLNCGSSSLKFAIIDAVNGDEYLSGLAECF--HLPEARIKWKMDGSKQEAALGAGAAHSEALNFIVNTILAQKPELS--AQLTAIGHRIVHGGEKYTSSVVIDESVIQGIKDSASFAPLHNPAHLIGIAEALKSFPQLKDKNVAVFDTAFHQTMPEESYLYALPYSLYKEHGVRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDQINKMLTKESGLLGLTEVTSDCRYVE-DNYATKEDAKRAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFIN--KEGTRPAVV-IPTNEELVIAQDASRLTA----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SLC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193567 for 3328 contacts (-58.2/contact) +
2D Compatibility (PS) -40431 + (NN) -9236 + (LL) 1368
1D Compatibility (HY) -30000 + (ID) 8400
Total energy: -280266.0 ( -84.21 by residue)
QMean score : 0.506
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