Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSSGGVFNNAAQIYNHDFYWDCLSPKATA-LSDELKEALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGHVNWHFVSQCYEWAKKEGLGSVDYYINELVHKKA
2NYB Chain:C ((2-188))
-FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSD-GKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA---------------------
General information:
TITO was launched using:
RESULT:
Template:
2NYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102872 for 1466 contacts (-70.2/contact) +
2D Compatibility (PS) -19103 + (NN) -6059 + (LL) 1744
1D Compatibility (HY) -17600 + (ID) 5100
Total energy: -148990.0 ( -101.63 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_2NYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NYB-query.scw
PDB file :
Tito_Scwrl_2NYB.pdb
: