Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENVYHKSLPKPLIYDLGCSTGNFFIALNQQIQQDIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVKF-KEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
3DTN Chain:A ((9-225))
---------------KFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASV-DT--------ENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIA-AGY----LDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT
General information:
TITO was launched using:
RESULT:
Template:
3DTN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137388 for 1703 contacts (-80.7/contact) +
2D Compatibility (PS) -22725 + (NN) -6497 + (LL) 2080
1D Compatibility (HY) -10000 + (ID) 2000
Total energy: -176530.0 ( -103.66 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3DTN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DTN-query.scw
PDB file :
Tito_Scwrl_3DTN.pdb
: