Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPHINAKIGDFYPQCLLCGDPLRVSYIAKNFLQDAKEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIVMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKIGNVFSSDFFYSFETHAFGLMAQYNHLAIEMEAAGLYATAMELNAKALCLCSVSDHLITKEALSPKERIESFDNMITLALEMMS
1PR4 Chain:C ((3-231))
-TPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTT---RQTTFNDMIKIALESVL
General information:
TITO was launched using:
RESULT:
Template:
1PR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197369 for 1992 contacts (-99.1/contact) +
2D Compatibility (PS) -23392 + (NN) -3681 + (LL) 236
1D Compatibility (HY) -24000 + (ID) 6150
Total energy: -254356.0 ( -127.69 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1PR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PR4-query.scw
PDB file :
Tito_Scwrl_1PR4.pdb
: