Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
M--------KRFDLRPLKADIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNSLRFNQADWTIVVRKKA
1DCJ Chain:A ((1-81))
MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGET--LLIIADDPATTRDIPGFCTFMEHELVAKET-DGLPYRYLIRKGG
General information:
TITO was launched using:
RESULT:
Template:
1DCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18056 for 579 contacts (-31.2/contact) +
2D Compatibility (PS) -8133 + (NN) -3959 + (LL) 480
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -32768.0 ( -56.59 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1DCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DCJ-query.scw
PDB file :
Tito_Scwrl_1DCJ.pdb
: