Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFI-KSSHARPAFKGLYGFPNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESLMHAISSIRVGMHFKELSQILEGAITERGFVPLKGFCGHGIGKKPHEEPEIPNYLEKGVKANSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEHTIAIVGNKAVILTER
4JUQ Chain:D ((2-250))
-NVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHY----GRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLR
General information:
TITO was launched using:
RESULT:
Template:
4JUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126460 for 2166 contacts (-58.4/contact) +
2D Compatibility (PS) -27325 + (NN) -10775 + (LL) 380
1D Compatibility (HY) -16800 + (ID) 4600
Total energy: -185580.0 ( -85.68 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_4JUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JUQ-query.scw
PDB file :
Tito_Scwrl_4JUQ.pdb
: