Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAETVKINSEFVTLGQLLQ-MIDVVSTGGMAKAYLSENTIYINGEQDNRRGKKLRNGDVILVPGVGKVKIEQGK
3JAM Chain:E ((40-96))
---------ESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTFPAGFMDVITLEATN--------
General information:
TITO was launched using:
RESULT:
Template:
3JAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28994 for 343 contacts (-84.5/contact) +
2D Compatibility (PS) -5902 + (NN) -465 + (LL) 1468
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -36443.0 ( -106.25 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_3JAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JAM-query.scw
PDB file :
Tito_Scwrl_3JAM.pdb
: