Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYQMKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVS--WPVGG--ELKP-DGEHWTFTAEAINIATTFLKSEGIELTPVKMIIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGT-PVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSAIKENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGIKHLPFHTGRVQITE |
| 1KKH Chain:A ((1-315)) | --PRGSHMIIETPSKVILFGEHAVVY-GYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNI--EPKTGFKINISSKIPI----SCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRK--------------------IKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIEN-----KDEIF---KEIDKVIDEALKIKNKEDFGKLMTKNHELLKKLNI------STPKLDRIVDIGNRFGFGAKLTGAGGGGCVIILVNEEK-EKELLKELNKEDVRIFNCRM------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145344 for 2663 contacts (-54.6/contact) +
2D Compatibility (PS) -33748 + (NN) -15274 + (LL) 3296
1D Compatibility (HY) -14400 + (ID) 3450
Total energy: -208920.0 ( -78.45 by residue)
QMean score : 0.466
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