Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSN--GIKHVRVDERLIHGQVATMWTNTIKATRIMIVDDAVVKNEMEKVALKTAVPAGVKLSILTVKGAANNINNDKYAGQQVFLIVKSPHALRGLVDAGVELPQINVGNMSTKAGSRQIKKSVSVTDENLEDFDYLA-QKGIKITAQMVPSEDAVEFANLLKK
3P3V Chain:A ((2-161))
--MTQPNIIMTRVDERLIHGQ-GQLWVKFLNCNTVIVANDAVSEDKIQQSLMKTVIPSSIAIRFFSIQKVIDIIHKAS-PAQSIFIVVKDLQDAKLLVEGGVPITEINIGNIHKTDDKVAITQFISLGETDKSAIRCLAHDHHVVFNTKTTPAGNSASDVDILD-
General information:
TITO was launched using:
RESULT:
Template:
3P3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104848 for 1236 contacts (-84.8/contact) +
2D Compatibility (PS) -16661 + (NN) -2523 + (LL) 384
1D Compatibility (HY) -12800 + (ID) 1850
Total energy: -138298.0 ( -111.89 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3P3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P3V-query.scw
PDB file :
Tito_Scwrl_3P3V.pdb
: