Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSNFTAKVPLSERMADVL----ISKDRWKDDEEGYLKVKYGLEIILINVMKFALVYGIALVTGLLLQTVTVHLSYLWLRRYSFGLHATKTLNCTLISLLMFVLAPFVFQNIPSNNWIVL--GTFGFILLN----MFLFAPADTESLPLIGEE----HRKTLKRKAMIGTLILTGIALL----------IPFAEMKTLIMVGSLFQVISINPLTYKLLKRRYRNYEKYE
3L56 Chain:B ((541-745))
----GPESVLVNTYQWIIRNWETVKIQWSQDPTMLYN-KMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFD---------------TVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKA-TKRLTVLGKDAGALTEDPDEGTAGVESAVLRGFLILGKEDKRYGPALSINELSNLAK--GEKANVLIGQGDVVLVMKRKRDSSILT
General information:
TITO was launched using:
RESULT:
Template:
3L56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162829 for 1323 contacts (-123.1/contact) +
2D Compatibility (PS) -18480 + (NN) 1998 + (LL) 1600
1D Compatibility (HY) -5600 + (ID) 1900
Total energy: -185211.0 ( -139.99 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_3L56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L56-query.scw
PDB file :
Tito_Scwrl_3L56.pdb
: