Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSRIDIGEIQAFLYQLRATNEPGRKTIQSIKAAVTKYVGDNSLKGKAVDASKNYYQMTYFPLCDAIIEAMDESEERLGQYIQDFHAEVDSSPDAKIDADGLYELGKMIDRIESKKEALAQRMNSGTEGQMQNYRSQLAIAYKQENILEKYLSFEQSHANFFDHLIDLVQAVQQTIRELQSNIQFNSQTGTYDLSKLNSATVSRMQQALNKSRGIKEDIIKELRDYTVLAVVYLDSNGKEQVMWLLERDGV---GVENAELKAYLTENGKYLNPEDYTIITNEELNKKINQSWRDGVYYLNGNKYDGLTGGVLSTSAYVEAGKGYIDKSGFADVVLGLGLSTAAIRGSLVYKKVNGPYKQNIKNRYPNEVQQGKIFDYTLENGQVKIRDGIKEVDFIIDLQGNLKVGRGHAHLSNGGDVQAAGKLKVDSNGNVRRITNESGHYTPTLGQAKNYQQIFENTGINTKNAWLETYQLDVTKSGYVDLAKLKRIDSVKLK-- |
1DE6 Chain:A ((10-425)) | -----------------------TQLEQAWELAKQRFAAVG------IDVEEALRQLDRLPVSMHCWQGDD---------VSGFENP-EGSLTGGIQATGNYP-GKARNASELRADLEQAMRLIPGP-----KRLNLHAIYLE---SDTPVSRDQIKPEHFKNWVEWAKA-----NQLGLDFNPSC---------FSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGH-FHPTEVISDKISAAMLY-----VPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHD------LFDRVHIGLDFF-DASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPG------DYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DE6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 91297 for 3565 contacts (25.6/contact) +
2D Compatibility (PS) -42842 + (NN) -717 + (LL) 5488
1D Compatibility (HY) -4800 + (ID) 2850
Total energy: 45576.0 ( 12.78 by residue)
QMean score : 0.198
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