Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVVACSVIGAALAIGLATLGAAIGQGIAVSRATEIIGKNPNAKKEVMGGLFLGLLMIVALMLFALAIAVILLWVNPFI
3V3C Chain:H ((2-79))
--LIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
General information:
TITO was launched using:
RESULT:
Template:
3V3C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58768 for 453 contacts (-129.7/contact) +
2D Compatibility (PS) -8373 + (NN) -7745 + (LL) 132
1D Compatibility (HY) -6800 + (ID) 1700
Total energy: -83254.0 ( -183.78 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_3V3C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V3C-query.scw
PDB file :
Tito_Scwrl_3V3C.pdb
: