Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------VTIKITRKTGIGSGITPVKIRIENEEIVKLDNHQSHFFMPKMEKTKVCVTDWFYGSQEAVLE---NSNDVVVRINR----KALLLNYS--------MFPFLFYG---FVMTSLFATLIALGL---CLVSFFYSRKHWF------EFVKIK------------
4QGL Chain:A ((1-174))
GAAAMAQIRIHEVNTRIENEVKVSKFLQEEGVLYEKWNISKLPPHLNENYSLTDENKAEILAVFSKEIADVSARRGYKAHDVISLSNSTPNLDELLINFQKEHHHTDDEVRFIVSGHGIFAIEGKDGTFFDVELEPGDLISVPENARHYFTLQDDRQVVAIRIFVTTEGWVPIY
General information:
TITO was launched using:
RESULT:
Template:
4QGL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72733 for 737 contacts (-98.7/contact) +
2D Compatibility (PS) -12699 + (NN) 6402 + (LL) 0
1D Compatibility (HY) -6000 + (ID) 1250
Total energy: -86280.0 ( -117.07 by residue)
QMean score : 0.149
(partial model without unconserved sides chains):
PDB file :
Tito_4QGL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QGL-query.scw
PDB file :
Tito_Scwrl_4QGL.pdb
: