Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIWIDAGHGGKDSGASG--NGLVEKNWVLTVAKQLQTELVK-AGFEVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNAGGGKGYEDYIYTSVPAATVEIQKIIHKNIITKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCD-STDALILEKKAYQTDYCLGIVSAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR
1JWQ Chain:A ((1-179))
MKVVVIDAGHGAKDSGAVGISRKNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQRSASKAFANVMHKYFAPAT---GLTDRGIRYGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDVK----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102013 for 1532 contacts (-66.6/contact) +
2D Compatibility (PS) -18744 + (NN) -6363 + (LL) 3632
1D Compatibility (HY) -10000 + (ID) 3050
Total energy: -136538.0 ( -89.12 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1JWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JWQ-query.scw
PDB file :
Tito_Scwrl_1JWQ.pdb
: