Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEETLLERGYRKYRGADVDIYFNTNVCEHSGNCVKGNVEL-----FNLDR-K--PWIM------PDNVSKEEAKRVIHTCPSGALQYIEK
3C8Y Chain:A ((137-208))
-----------------SKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEK--
General information:
TITO was launched using:
RESULT:
Template:
3C8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26078 for 365 contacts (-71.4/contact) +
2D Compatibility (PS) -5817 + (NN) 1416 + (LL) 1364
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -31265.0 ( -85.66 by residue)
QMean score : 0.197
(partial model without unconserved sides chains):
PDB file :
Tito_3C8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C8Y-query.scw
PDB file :
Tito_Scwrl_3C8Y.pdb
: