Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------MSEIKVKEATLAKYATKLESKGKSTEYLPMKGGNMSYSQANSINHFRTALFDLVDAVDNFQGVVGTDAKRLKELGASFTRKDQELERSMGLGGK---------
4OYD Chain:B ((1-117))
ADPKKVLDKAKDQAENRVRELKQKLEELYKEARKLDLTQEMRRKLELR---YIAAMLMAIGDIYNAIRQAKQEADKLKKAGLVNSQQLDELKRRLEELKEEASRKARDYGREFQLKLEYG
General information:
TITO was launched using:
RESULT:
Template:
4OYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4 for 511 contacts (-0.0/contact) +
2D Compatibility (PS) -9647 + (NN) -2444 + (LL) -424
1D Compatibility (HY) -400 + (ID) 900
Total energy: -13819.0 ( -27.04 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_4OYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OYD-query.scw
PDB file :
Tito_Scwrl_4OYD.pdb
: