Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MINSRFYEGFEG--EAELSFVAGDNKLLIWNGYFETILDNL-LDCNVEREGVLKEYFNHEGWYDDSPWMIEDNSLTIIQLKCFDINKINQTSM---------KDDLEE--VVKTIISFLENNRFSKIYIEYE----
2JOE Chain:A ((1-139))
MGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVKLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2JOE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30489 for 752 contacts (-40.5/contact) +
2D Compatibility (PS) -11642 + (NN) 4798 + (LL) 0
1D Compatibility (HY) 1600 + (ID) 550
Total energy: -36283.0 ( -48.25 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_2JOE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JOE-query.scw
PDB file :
Tito_Scwrl_2JOE.pdb
: