Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKIKKILPQTIKSEVYFIDEIKNFDIVTEKMNDNFYTYRLGSNVMMWLNDEGVIGEIECIFPAQIDNLITLWEEKNTVVQNGFPMIDTDIVENKTFIPKVRIFNHGDYFILYFSNMYKYNKEIISENLTFYAKDTELIAIKAELT
3GXV Chain:A ((1-122))
MDHLKHLQQLQNIERIVLSGIVLANHKIEEVHSVLEPSDFYY-----------------------PPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKEEDLVAIFAASPIDNIEAYVEEIKNASIKRKLFGLANTIREQAH
General information:
TITO was launched using:
RESULT:
Template:
3GXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13228 for 827 contacts (-16.0/contact) +
2D Compatibility (PS) -12541 + (NN) 1144 + (LL) 1992
1D Compatibility (HY) 4000 + (ID) 650
Total energy: -19283.0 ( -23.32 by residue)
QMean score : 0.085
(partial model without unconserved sides chains):
PDB file :
Tito_3GXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GXV-query.scw
PDB file :
Tito_Scwrl_3GXV.pdb
: