Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MNIVIALIPAVMWGIMPLVVSKIGGKPRQQI-----------IGTTFGALAFAIGVFIFTNPEYTATIIIASFVSGAFWSLGQMNQFRAFTQVGVSKTMPLSTGMQLVGTSLFGVFAFHEWGTTSKLVLGFSALALIIIGIFLTSYQQHKDENSG--QNMKKGIITLLISSVGYVGYVVITRWFDISGWDAILPQAIGMVVA-GLLFSIKSEEKRFTKQTWLNMIPGVMWATGNLALLFSNKLVGIATGFSLSQMGVVISTIGGILFLGEKKTKKELILVIIGVVLVIIGGTMIGIAKS |
| 2AVW Chain:A ((20-309)) | VTSVWTKGVTPPANFTQGEDVFHAPYVANQGWYDITKTFNGKDDLLAGAATAGNMLHWWFDQNKDQIKRYLEEHPEKQKINFNGEQMFDVKEAIDTKNHQLDSKLFEYFKEK-----AFPYLSTKHLGVFPDHVIDMFINGYRLSLTNHGPTPVKEGSKDPRGGIFDAVFTR-GDQSKLLTSRHDFKEKNLKEISDLIKKELTEGKALGLSHTYANVRINHVINLWGADFDSNGNLKAIYVTD-SDSNASIGMKKYFVGVNSAGKVAISAKEIKEDNIGAQVLGLFTLSTGQDSWNQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AVW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -229565 for 2264 contacts (-101.4/contact) +
2D Compatibility (PS) -28403 + (NN) 3196 + (LL) 1008
1D Compatibility (HY) 400 + (ID) 1400
Total energy: -254764.0 ( -112.53 by residue)
QMean score : 0.162
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