Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------MPKTIASIKTNLDSRLGKALTL----KANGGRKKTIERCGILAETYPSVFIVEL--DQDENNFERVSYSYTDILTDAVELVFTD-DNKELAL
4G6V Chain:B ((2-104))
AIDLFCYLSIDRGAAESDLNKIRSNHSELFEGKFLISPVRDADFSLKEIAAEHGLVAE---SFFLVSLNDKNSADLIPIVSKILVDGFNGGAILILQDNEYRRTSL
General information:
TITO was launched using:
RESULT:
Template:
4G6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25471 for 497 contacts (-51.2/contact) +
2D Compatibility (PS) -8600 + (NN) 697 + (LL) 4
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -39020.0 ( -78.51 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_4G6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G6V-query.scw
PDB file :
Tito_Scwrl_4G6V.pdb
: