Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIAKFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFFMLIDFGIEQIIKLIV
2WW9 Chain:B ((24-72))
--APVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH--------
General information:
TITO was launched using:
RESULT:
Template:
2WW9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14857 for 187 contacts (-79.4/contact) +
2D Compatibility (PS) -5113 + (NN) -3649 + (LL) 1448
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -25071.0 ( -134.07 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_2WW9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WW9-query.scw
PDB file :
Tito_Scwrl_2WW9.pdb
: