Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVM-VNMFGRETPVEVDFNQIEKL
3P8B Chain:B ((2-145))
-AGKIFAVRVTHGQEETTAKLIYSKV---------RTYNLPIYAILA----------PSRVKGYIFVEAPNKGVVDEAIRGIRHARGV--------LPGEVPFKEIEHFLEEK-----PAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIV-PIPVTIKGDYVRLI
General information:
TITO was launched using:
RESULT:
Template:
3P8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24926 for 981 contacts (-25.4/contact) +
2D Compatibility (PS) -15342 + (NN) -4522 + (LL) 1428
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -48012.0 ( -48.94 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_3P8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P8B-query.scw
PDB file :
Tito_Scwrl_3P8B.pdb
: