Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
2VFI Chain:B ((35-244))
----------------------------------SKLDVVVFPVSVHYDHTRKLLQ-SKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLID--NFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDII--------
General information:
TITO was launched using:
RESULT:
Template:
2VFI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101930 for 1628 contacts (-62.6/contact) +
2D Compatibility (PS) -22776 + (NN) -12421 + (LL) 2712
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -155465.0 ( -95.49 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2VFI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VFI-query.scw
PDB file :
Tito_Scwrl_2VFI.pdb
: