Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDKKSENQTEKTETKENKGMTRREMLKLSAVAGTGIAVGATGLGTILNVVDQVDKALTPKEKAETGVPFYASNQAGIITAQQTYCYIASFDIQTESRQILQDLFVKWTKFADLTTSGGVLRDVDNDMLPPNDTGEADGLGISNFTVTLGYGPTFFEK-DGKDRFGVKAKKPKYLEKIPHMAHDSLDEAYSDGDLCIQVCADDQQVAFHGIRNFIRLASGVAVVRWIEEGF-----LSAPKNETPRNLFGFKDGTANVDHDSNKGYKDVVWAEKDEPE--WMRNGSYLGYRKIQMLIEIWDRSSLLDQEDTFGRKKASGAPYHKKHEHDKVDPSK--------LPADSHVRLA---KDTKQQMHRRAYSYTNGIDKSTGTIDAGLLFICFTQNPAKQFLPM-LSIMGKMDKLNEYTVPIGSAMFACQGGLA---PGEIFGEKLL |
| 4GS1 Chain:B ((99-394)) | ------------------------------------------------------------------------------------------------------------------------------------------GLLPASLMVTIGIGGSLLEAMDAADR------RPDALADLPEFATDDLRPRWCGGDLMLQVGAEDPMVLAAAVDELVAATAPTTTVRWSLRGFRRTAAAAQDPDATPRNLMGQIDGTANPAQDHPLFTRTVTAPPADDPAHAWMDGGSYLVVRRIRMLLDEWRRLDVPDRERVIGRHLDTGAPLGGEKETDPVVLTARDADGRLVIPEDAHVRLANPENNLGARMVRRGYNYDEGW-RDDGVRDAGLLFMAWQGNPATGFVPVQRSLVEQGDALNRYTRHEGSALFAVPAATADRYPGQDLVE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GS1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -37285 for 1967 contacts (-19.0/contact) +
2D Compatibility (PS) -28801 + (NN) -8348 + (LL) 9204
1D Compatibility (HY) -15600 + (ID) 5300
Total energy: -86130.0 ( -43.79 by residue)
QMean score : 0.275
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