Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDL-DIEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAASRGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
2OXM Chain:A ((6-220))
--ESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
2OXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103400 for 1758 contacts (-58.8/contact) +
2D Compatibility (PS) -23098 + (NN) -14201 + (LL) 644
1D Compatibility (HY) -21200 + (ID) 5450
Total energy: -166705.0 ( -94.83 by residue)
QMean score : 0.668
(partial model without unconserved sides chains):
PDB file :
Tito_2OXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OXM-query.scw
PDB file :
Tito_Scwrl_2OXM.pdb
: