Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKIIAVTACATGVAHTYMAAQALKKGAKKMGN--LIKVETQGATG------------------------IENELTEKDVNIGEVVIFAVDTKVRNKERFDGKVVLEVPVSAPIKDAEKVINAALALIDEK
3JVI Chain:A ((4-95))
-SMKLL--FVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFDYIFAMDND---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3JVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9236 for 406 contacts (-22.7/contact) +
2D Compatibility (PS) -7077 + (NN) -2148 + (LL) 3820
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -17441.0 ( -42.96 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_3JVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVI-query.scw
PDB file :
Tito_Scwrl_3JVI.pdb
: