Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKGLKKMKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQTGKAN-PILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQKIELEMDEIKLDSIIHDISVLESKDRPQNNEFITKFL
1QBJ Chain:A ((6-70))
---------SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA----------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1QBJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30606 for 422 contacts (-72.5/contact) +
2D Compatibility (PS) -6622 + (NN) 438 + (LL) 6696
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -33094.0 ( -78.42 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1QBJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QBJ-query.scw
PDB file :
Tito_Scwrl_1QBJ.pdb
: