Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQILFIQ---TGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNM---------------VVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTS-GIFLEDKEDKNDLMYIVNASVETGY
2RH3 Chain:A ((82-202))
IQVFLSARPPAPEVSKIYDNLILQYSPSKSLQ-MILRRALGDFENMLADGSFRAAPKSYPIPHTAFEKSIIVQTSRMFP---VSLIEAARNHFDPLGLETARAFGHKLATAALACFFAREKATNS-------------
General information:
TITO was launched using:
RESULT:
Template:
2RH3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40314 for 688 contacts (-58.6/contact) +
2D Compatibility (PS) -10821 + (NN) 425 + (LL) 1220
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -55840.0 ( -81.16 by residue)
QMean score : 0.266
(partial model without unconserved sides chains):
PDB file :
Tito_2RH3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RH3-query.scw
PDB file :
Tito_Scwrl_2RH3.pdb
: