Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGADELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISLNSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKAVQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNAAHMVEVFEKTKATAALAASIFHYGELSIKNVKTTLLEKGVNIRP
1GPW Chain:C ((1-249))
MLAKRIIACLNVKDGRVVKGTNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEA-FLAGADAALAASVFHFREIDVRELKEYLKKHGVNVR-
General information:
TITO was launched using:
RESULT:
Template:
1GPW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139225 for 2164 contacts (-64.3/contact) +
2D Compatibility (PS) -27430 + (NN) -12522 + (LL) -8
1D Compatibility (HY) -21200 + (ID) 6400
Total energy: -206785.0 ( -95.56 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_1GPW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPW-query.scw
PDB file :
Tito_Scwrl_1GPW.pdb
: