Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKISS---DATEISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQL-DGEYVYYVHSYYANC--PEEYIIATSGYSIEVPGMIN-KGNIYGAQFHPEKSGQI-GLEILKGFKEVTYSCKSSQQ
2A9V Chain:A ((15-206))
KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDE--EL--DKLGSVGKYIDDHNYPILGICVGAQFIALHFGASV------------VKA------KHPEFGKTKVSVMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASSAT-CQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYREIQ-
General information:
TITO was launched using:
RESULT:
Template:
2A9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76450 for 1553 contacts (-49.2/contact) +
2D Compatibility (PS) -19613 + (NN) -6422 + (LL) 740
1D Compatibility (HY) -7200 + (ID) 2350
Total energy: -111295.0 ( -71.66 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_2A9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A9V-query.scw
PDB file :
Tito_Scwrl_2A9V.pdb
: