Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEGEIPEKYRSVDEEEINRSFGGSLPAVHAVVKSYLQIIWVTKWTE---
1FDM Chain:? ((1-50))
AEGDDPAKAAFDSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS
General information:
TITO was launched using:
RESULT:
Template:
1FDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1969 for 225 contacts (8.8/contact) +
2D Compatibility (PS) -4805 + (NN) -427 + (LL) 0
1D Compatibility (HY) -800 + (ID) 300
Total energy: -4363.0 ( -19.39 by residue)
QMean score : 0.092
(partial model without unconserved sides chains):
PDB file :
Tito_1FDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDM-query.scw
PDB file :
Tito_Scwrl_1FDM.pdb
: